研究業績 / Publication List

2021-:

35) Imaizumi Y, Takanuki K, Miyake T, Takemoto M, Hirata K, Hirose M, Oi R, Kobayashi T, Miyoshi K, Aruga R, Yokoyama T, Katagiri S, Matsuura H, Iwasaki K, Kato T, Kaneko MK, Kato Y, Tajiri M, Akashi S, Nureki O, Hizukuri Y, Akiyama Y, Nogi T (2022) Mechanistic insights into intramembrane proteolysis by E. coli site-2 protease homolog RseP. Sci Adv 8, eabp9011. 

34) Nagae M, Suzuki K, Yasui N, Nogi T, Kohno T, Hattori M, Takagi J.(2021) Structural studies of reelin N-terminal region provides insights into a unique structural arrangement and functional multimerization. J Biochem 169, 555-564. 

33) Tamura-Sakaguchi R, Aruga R, Hirose M, Ekimoto T, Miyake T, Hizukuri Y, Oi R, Kaneko MK, Kato Y, Akiyama Y, Ikeguchi M, Iwasaki K, Nogi T.(2021) Moving toward generalizable NZ-1 labeling for 3D structure determination with optimized epitope-tag insertion. Acta Cryst D77, 645-662.

2011-2020:

32) Parvin S, Takeda R, Sugiura Y, Neyazaki M, Nogi T, Sasaki Y. (2019) Fragile X mental retardation protein regulates accumulation of the active zone protein Munc18-1 in presynapses via local translation in axons during synaptogenesis. Neurosci res 146, 36-47.

31) Tamura R, Oi R, Akashi S, Kaneko MK, Kato Y, Nogi T. (2019) Application of the NZ-1 Fab as a crystallization chaperone for PA tag-inserted target proteins. Prot Sci 28, 823-836.

30) Nogi T. (2018) How multi-scale structural biology elucidated context-dependent variability in ectodomain conformation along with the ligand capture and release cycle for LDLR family members. Biophys Rev 10, 481-492.

29) Hirai H, Yasui N, Yamashita K, Tabata S, Yamamoto M, Takagi J, Nogi T. (2017) Structural basis for ligand capture and release by the endocytic receptor ApoER2. EMBO rep 18, 982-999.

28) Nagae M, Mishra SK, Neyazaki M, Oi R, Ikeda A, Matsugaki N, Akashi S, Manya H, Mizuno M, Yagi H, Kato K, Senda T, Endo T, Nogi T, and Yamaguchi Y (2017) 3D structural analysis of protein O-mannosyl kinase, POMK, a causative gene product of dystroglycanopathy. Genes Cells 22, 348-359.

27) Nogi T, Mihara E, Yasui N, and Takagi J (2017) Immunoaffinity Purification of the Glycosylated Extracellular Fragment of Mouse Plexin A2 Produced in a Mammalian Expression System. Methods Mol Biol 1493, 57-72.

26) Akiyama K, Mizuno S, Hizukuri Y, Mori H, Nogi T, Akiyama Y (2015) Roles of the membrane-reentrant β-hairpin-like loop of RseP protease in selective substrate cleavage. Elife 4, e08928.

25) Kitago Y, Nagae M, Nakata Z, Yagi-Utsumi M, Takagi-Niidome S, Mihara E, Nogi T, Kato K, Takagi J (2015) Structural basis for amyloidogenic peptide recognition by sorLA. Nature Struct Mol Biol 22, 199-206.

24) Fujii Y, Kaneko M, Neyazaki M, Nogi T, Kato Y and Takagi J (2014) PA tag: A versatile protein tagging system using a super high affinity antibody against a dodecapeptide derived from human podoplanin. Protein Expr Purif 95, 240-247.

23) Hizukuri Y, Oda T, Tabata S, Tamura-Kawakami K, Oi R, Sato M, Takagi J, Akiyama Y and Nogi T (2014) A Structure-Based Model of Substrate Discrimination by a Noncanonical PDZ Tandem in the Intramembrane-Cleaving Protease RseP. Structure 22, 326-336.

22) Tanaka H, Miyazaki N, Matoba K, Nogi T, Iwasaki K and Takagi J. (2012) Higher-order architecture of cell adhesion mediated by polymorphic synaptic adhesion molecules neurexin and neuroligin. Cell Rep 2, 101-110.

21) Nagae M, Re S, Mihara E, Nogi T, Sugita Y and Takagi J. (2012) Crystal structure of the ligand binding domain of α5β1 integrin: Atomic details of the fibronectin receptor, J Cell Biol, 197, 131-140.

20) Tanaka H, Nogi T, Yasui N, Iwasaki K and Takagi J. (2011) Structural basis for variant-specific neuroligin-binding by α-neurexin. PLoS ONE, 6, e19411.

19) Nakata Z, Nagae M, Yasui N, Bujo H, Nogi T and Takagi J. (2011) Crystallization and preliminary crystallographic analysis of human LR11 Vps10p domain. Acta Cryst, F67, 129-132.

2001-2010:

18) Nogi T, Yasui N, Mihara E, Matsunaga Y, Noda M, Yamashita N, Toyofuku T, Uchiyama S, Goshima Y, Kumanogoh A and Takagi J. (2010) Structural basis for semaphorin signalling through the plexin receptor. Nature, 467, 1123-1127.

17) Yasui N, Nogi T and Takagi J. (2010) Structural basis for specific recognition of reelin by its receptors. Structure, 18, 320-331.

16) Nagae M, Nishikawa K, Yasui N, Yamasaki M, Nogi T and Takagi J. (2008) Structure of F-spondin reeler domain reveals a unique β-sandwich fold with a deformable disulfide-bonded loop. Acta Cryst, D64, 1138-1145.

15) Sangawa T, Nogi T and Takagi J. (2008) A murine monoclonal antibody that binds N-terminal extracellular segment of human protease activated receptor-4. Hybridoma, 27, 331-335.

14) Nogi T, Sangawa T, Tabata S, Nagae M, Tamura-Kawakami K, Beppu A, Hattori M, Yasui N and Takagi J. (2008) Novel affinity tag system using structurally defined antibody-tag interaction: Application to single-step protein purification. Protein Sci, 17, 2120-2126.

13) Yasui N, Nogi T, Kitao T, Nakano Y, Hattori M, Takagi J. (2007) Structure of a receptor-binding fragment of reelin and mutational analysis reveal a recognition mechanism similar to endocytic receptors. Proc Natl Acad Sci USA, 104, 9988-9993.

12) Nogi T, Yasui N, Hattori M, Iwasaki K and Takagi J. (2006) Structure of a signaling-competent reelin fragment revealed by X-ray crystallography and electron tomography. EMBO J, 25, 3675-3683.

11) Nogi T, Hirano Y and Miki K. (2005) Structural and functional studies on the tetraheme cytochrome subunit and its electron donor proteins: the possible docking mechanisms during the electron transfer reaction. Photosynth Res, 85, 87-99; review

10) Shiba T, Kawasaki M, Takatsu H, Nogi T, Matsugaki N, Igarashi N, Suzuki M, Kato R, Nakayama K and Wakatsuki S. (2003) Molecular mechanism of membrane recruitment of GGA by ARF in lysosomal protein transport. Nature Struct Biol, 10, 386-393.

9) Liu L, Nogi T, Kobayashi M, Nozawa T and Miki K. (2002) Ultrahigh-resolution structure of high-potential iron-sulfur protein from Thermochromatium tepidum. Acta Cryst, D58, 1085-1091.

8) Nogi T, Shiba Y, Kawasaki M, Shiba T, Matsugaki N, Igarashi N, Suzuki M, Kato R, Takatsu H, Nakayama K and Wakatsuki S. (2002) Structural basis for the regulation of clathrin-mediated membrane traffic through the γ-adaptin ear domain. Nature Struct Biol, 9, 527-531.

7) Shiba T, Takatsu H, Nogi T, Matsugaki N, Kawasaki M, Igarashi N, Suzuki M, Kato R, Earnest T, Nakayama K and Wakatsuki S. (2002) Structural basis for recognition of acidic-cluster dileucine sequence by GGA1. Nature, 415, 937-941.

6) Nogi T and Miki K. (2001) Structural Basis of Bacterial Photosynthetic Reaction Center. J Biochem, 130, 319-329; review

5) Fathir I, Mori T, Nogi T, Kobayashi M, Nozawa T and Miki K. (2001) Structure of the H subunit of the photosynthetic reaction center from the thermophilic purple sulfur bacterium, Thermochromatium tepidum: implications for the specific binding of the lipid molecule to the membrane protein complex. Eur J Biochem, 268, 2652 –2657.

-2000:

4) Nogi T, Fathir I, Kobayashi M, Nozawa T and Miki K. (2000) Crystal structures of photosynthetic reaction center and high-potential iron-sulfur protein from Thermochromatium tepidum: thermostability and electron transfer. Proc Natl Acad Sci USA, 97, 13561 – 13566.

3) Nogi T, Kabayashi M, Nozawa T and Miki K. (2000) Crystallization and Preliminary Crystallographic Analysis of High-potential Iron-sulfur Protein from Thermochromatium tepidum. Acta Cryst, D56, 656 – 658.
2) Kitano K, Sasaki R, Nogi T, Nakagawa A, Miki K and Tanaka I. (2000) Utilization of Microgravity to Improve Crystal Quality of Biologically Important Proteins: chaperonin-60, GrpE, B-subunit of V-type ATPase, and MIF. J Cryst Growth, 210, 819 – 823.

1) Nogi T, Fukami TA, Ishida M, Yoshida M and Miki K. (1999) Purification, Crystallization and Preliminary X-ray Crystallographic Analysis of Thermus thermophilus V1-ATPase B subunit. J Struct Biol, 127, 79-82.