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    <title>0 | Functional Genomics</title>
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    <item>
      <title>The status of the human gene catalogue</title>
      <link>https://www.tsurumi.yokohama-cu.ac.jp/fg/publication/gene_catalogue/</link>
      <pubDate>Wed, 04 Oct 2023 00:00:00 +0000</pubDate>
      <guid>https://www.tsurumi.yokohama-cu.ac.jp/fg/publication/gene_catalogue/</guid>
      <description>&lt;p&gt;
&lt;a href=&#34;https://www.nature.com/articles/s41586-023-06490-x&#34; target=&#34;_blank&#34; rel=&#34;noopener&#34;&gt;Nature: 622, 41-47(2023) PMID:37794265&lt;/a&gt;&lt;/p&gt;
&lt;p&gt;Nature Japanに掲載された日本語の要約&lt;/p&gt;
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&lt;a href=&#34;https://www.natureasia.com/ja-jp/nature/622/7981/s41586-023-06490-x/%e3%83%92%e3%83%88%e9%81%ba%e4%bc%9d%e5%ad%90%e3%82%ab%e3%82%bf%e3%83%ad%e3%82%b0%e3%81%ae%e7%8f%be%e7%8a%b6?_gl=1*47f7rp*_up*MQ..*_ga*NjAzMjgyMTUuMTcxMzQ5NTQzNQ..*_ga_XLGET1PQ5F*MTcxMzQ5NTQzNC4xLjEuMTcxMzQ5NTQzNC4wLjAuMA&#34; target=&#34;_blank&#34; rel=&#34;noopener&#34;&gt;ゲノミクス：ヒト遺伝子カタログの現状&lt;/a&gt;&lt;/p&gt;
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      <title>Prediction of transcription factors associated with DNA demethylation during human cellular development.</title>
      <link>https://www.tsurumi.yokohama-cu.ac.jp/fg/publication/demethyl_tf_map/</link>
      <pubDate>Thu, 10 Feb 2022 00:00:00 +0000</pubDate>
      <guid>https://www.tsurumi.yokohama-cu.ac.jp/fg/publication/demethyl_tf_map/</guid>
      <description>&lt;p&gt;
&lt;a href=&#34;https://link.springer.com/article/10.1007/s10577-022-09685-6&#34; target=&#34;_blank&#34; rel=&#34;noopener&#34;&gt;Chromosome Res. 2022 (2022) PMID: 35142952&lt;/a&gt;&lt;/p&gt;
</description>
    </item>
    
    <item>
      <title>Generation of ovarian follicles from mouse pluripotent stem cells</title>
      <link>https://www.tsurumi.yokohama-cu.ac.jp/fg/publication/foslc/</link>
      <pubDate>Fri, 16 Jul 2021 00:00:00 +0000</pubDate>
      <guid>https://www.tsurumi.yokohama-cu.ac.jp/fg/publication/foslc/</guid>
      <description>&lt;p&gt;
&lt;a href=&#34;https://science.sciencemag.org/content/373/6552/eabe0237&#34; target=&#34;_blank&#34; rel=&#34;noopener&#34;&gt;Science 373, 6552 (2021)&lt;/a&gt;&lt;/p&gt;
&lt;p&gt;理研プレスリリース&lt;/p&gt;
&lt;p&gt;
&lt;a href=&#34;https://www.riken.jp/press/2021/20210716_1/index.html&#34; target=&#34;_blank&#34; rel=&#34;noopener&#34;&gt;マウス多能性幹細胞から機能的な卵巣組織の再生に世界で初めて成功！－卵子の産生に動物由来の体細胞が不要に－&lt;/a&gt;&lt;/p&gt;
</description>
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    <item>
      <title>SINEUP long non-coding RNA acts via PTBP1 and HNRNPK to promote translational initiation assemblies</title>
      <link>https://www.tsurumi.yokohama-cu.ac.jp/fg/publication/sineup_mechanism/</link>
      <pubDate>Mon, 02 Nov 2020 00:00:00 +0000</pubDate>
      <guid>https://www.tsurumi.yokohama-cu.ac.jp/fg/publication/sineup_mechanism/</guid>
      <description>&lt;p&gt;
&lt;a href=&#34;https://academic.oup.com/nar/article/48/20/11626/5936032&#34; target=&#34;_blank&#34; rel=&#34;noopener&#34;&gt;Nucleic Acids Research 48, 20 (2020) PMID: 33130894&lt;/a&gt;&lt;/p&gt;
&lt;p&gt;理研プレスリリース&lt;/p&gt;
&lt;p&gt;
&lt;a href=&#34;https://www.riken.jp/press/2020/20201102_1/index.html&#34; target=&#34;_blank&#34; rel=&#34;noopener&#34;&gt;タンパク質を増やすSINEUPのメカニズムを解明&lt;/a&gt;&lt;/p&gt;
</description>
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    <item>
      <title>Time-course microarray transcriptome data of in vitro cultured testes and age-matched in vivo testes</title>
      <link>https://www.tsurumi.yokohama-cu.ac.jp/fg/publication/ivs_data/</link>
      <pubDate>Sat, 31 Oct 2020 00:00:00 +0000</pubDate>
      <guid>https://www.tsurumi.yokohama-cu.ac.jp/fg/publication/ivs_data/</guid>
      <description>&lt;p&gt;
&lt;a href=&#34;https://www.sciencedirect.com/science/article/pii/S2352340920313640?via%3Dihub&#34; target=&#34;_blank&#34; rel=&#34;noopener&#34;&gt;Data in Brief 33 (Availabel online)(2020) PMID: 33241095&lt;/a&gt;&lt;/p&gt;
</description>
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    <item>
      <title>Synthetic in vitro transcribed lncRNAs (SINEUPs) with chemical modifications enhance target mRNA translation</title>
      <link>https://www.tsurumi.yokohama-cu.ac.jp/fg/publication/sineup_chemical/</link>
      <pubDate>Sun, 04 Oct 2020 00:00:00 +0000</pubDate>
      <guid>https://www.tsurumi.yokohama-cu.ac.jp/fg/publication/sineup_chemical/</guid>
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&lt;a href=&#34;https://febs.onlinelibrary.wiley.com/doi/10.1002/1873-3468.13928&#34; target=&#34;_blank&#34; rel=&#34;noopener&#34;&gt;FEBS Letter, Online ahead of print (2020) PMID: 33012004&lt;/a&gt;&lt;/p&gt;
</description>
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    <item>
      <title>Transcriptome analysis reveals inadequate spermatogenesis and immediate radical immune reactions during organ culture in vitro spermatogenesis</title>
      <link>https://www.tsurumi.yokohama-cu.ac.jp/fg/publication/ivs_transcreeptome/</link>
      <pubDate>Thu, 01 Oct 2020 00:00:00 +0000</pubDate>
      <guid>https://www.tsurumi.yokohama-cu.ac.jp/fg/publication/ivs_transcreeptome/</guid>
      <description>&lt;p&gt;
&lt;a href=&#34;https://www.sciencedirect.com/science/article/pii/S0006291X20313826?via%3Dihub&#34; target=&#34;_blank&#34; rel=&#34;noopener&#34;&gt;Biochem Biophys Res Commun. 530(4):732-738 (2020) PMID: 32782148&lt;/a&gt;&lt;/p&gt;
</description>
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    <item>
      <title>Functional annotation of human long noncoding RNAs via molecular phenotyping</title>
      <link>https://www.tsurumi.yokohama-cu.ac.jp/fg/publication/fantom_6pre/</link>
      <pubDate>Tue, 28 Jul 2020 00:00:00 +0000</pubDate>
      <guid>https://www.tsurumi.yokohama-cu.ac.jp/fg/publication/fantom_6pre/</guid>
      <description>&lt;p&gt;
&lt;a href=&#34;https://genome.cshlp.org/content/30/7/1060&#34; target=&#34;_blank&#34; rel=&#34;noopener&#34;&gt;Genome Res. 30:1377-1 (2020) PMID: 32718982&lt;/a&gt;&lt;/p&gt;
&lt;h1 id=&#34;理研プレスリリース&#34;&gt;理研プレスリリース&lt;/h1&gt;
&lt;p&gt;
&lt;a href=&#34;https://www.riken.jp/press/2020/20200728_1/&#34; target=&#34;_blank&#34; rel=&#34;noopener&#34;&gt;長鎖ノンコーディングRNAのさまざまな機能 －理研を中心とする国際研究コンソーシアム「FANTOM6－&lt;/a&gt;&lt;/p&gt;
</description>
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    <item>
      <title>An NMR-based approach reveals the core structure of the functional domain of SINEUP lncRNAs</title>
      <link>https://www.tsurumi.yokohama-cu.ac.jp/fg/publication/sineup_structure/</link>
      <pubDate>Wed, 22 Jul 2020 00:00:00 +0000</pubDate>
      <guid>https://www.tsurumi.yokohama-cu.ac.jp/fg/publication/sineup_structure/</guid>
      <description>&lt;p&gt;
&lt;a href=&#34;https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gkaa598/5874913&#34; target=&#34;_blank&#34; rel=&#34;noopener&#34;&gt;Nucleic Acids Research: gkaa598(2020) PMID:32697302&lt;/a&gt;&lt;/p&gt;
&lt;p&gt;理研プレスリリース&lt;/p&gt;
&lt;p&gt;
&lt;a href=&#34;https://www.riken.jp/press/2020/20200806_1/index.html&#34; target=&#34;_blank&#34; rel=&#34;noopener&#34;&gt;タンパク質を増やす秘訣に迫る－翻訳を促進するノンコーディングRNAの2次構造を決定－&lt;/a&gt;&lt;/p&gt;
</description>
    </item>
    
    <item>
      <title>RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions</title>
      <link>https://www.tsurumi.yokohama-cu.ac.jp/fg/publication/radicl/</link>
      <pubDate>Mon, 24 Feb 2020 00:00:00 +0000</pubDate>
      <guid>https://www.tsurumi.yokohama-cu.ac.jp/fg/publication/radicl/</guid>
      <description>&lt;p&gt;
&lt;a href=&#34;https://www.nature.com/articles/s41467-020-14337-6&#34; target=&#34;_blank&#34; rel=&#34;noopener&#34;&gt;Nat Commun 11(1):1018 (2020) PMID: 32094342&lt;/a&gt;&lt;/p&gt;
&lt;p&gt;理研プレスリリース&lt;/p&gt;
&lt;p&gt;
&lt;a href=&#34;https://www.riken.jp/press/2020/20200224_1/index.html&#34; target=&#34;_blank&#34; rel=&#34;noopener&#34;&gt;RNA-クロマチン相互作用を推定する新技術「RADICL-seq」&lt;/a&gt;&lt;/p&gt;
</description>
    </item>
    
    <item>
      <title>Single-cell transcriptomics reveals expansion of cytotoxic CD4 T cells in supercentenarians</title>
      <link>https://www.tsurumi.yokohama-cu.ac.jp/fg/publication/supercentenarian/</link>
      <pubDate>Tue, 26 Nov 2019 00:00:00 +0000</pubDate>
      <guid>https://www.tsurumi.yokohama-cu.ac.jp/fg/publication/supercentenarian/</guid>
      <description>&lt;p&gt;
&lt;a href=&#34;https://www.pnas.org/content/116/48/24242&#34; target=&#34;_blank&#34; rel=&#34;noopener&#34;&gt;PNAS 116 (48), 24242-24251 (2019) PMID: 31719197&lt;/a&gt;&lt;/p&gt;
&lt;p&gt;理研プレスリリース&lt;/p&gt;
&lt;p&gt;
&lt;a href=&#34;https://www.riken.jp/press/2019/20191113_1/index.html&#34; target=&#34;_blank&#34; rel=&#34;noopener&#34;&gt;110歳以上の超長寿者が持つ特殊なT細胞&lt;/a&gt;&lt;/p&gt;
</description>
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    <item>
      <title>A screening system to identify transcription factors that induce binding site-directed DNA demethylation</title>
      <link>https://www.tsurumi.yokohama-cu.ac.jp/fg/publication/demethyl_tf_screening/</link>
      <pubDate>Fri, 08 Dec 2017 00:00:00 +0000</pubDate>
      <guid>https://www.tsurumi.yokohama-cu.ac.jp/fg/publication/demethyl_tf_screening/</guid>
      <description>&lt;p&gt;
&lt;a href=&#34;https://epigeneticsandchromatin.biomedcentral.com/articles/10.1186/s13072-017-0169-6&#34; target=&#34;_blank&#34; rel=&#34;noopener&#34;&gt;Epigenetics Chromatin 10, 60 (2017) PMID: 29221486&lt;/a&gt;&lt;/p&gt;
&lt;p&gt;理研プレスリリース&lt;/p&gt;
&lt;p&gt;
&lt;a href=&#34;https://www.riken.jp/press/2017/20171214_2/index.html&#34; target=&#34;_blank&#34; rel=&#34;noopener&#34;&gt;DNAのメチル化を切り替える因子の同定法を開発&lt;/a&gt;&lt;/p&gt;
</description>
    </item>
    
    <item>
      <title>Cell Based Assays of SINEUP Non-coding RNAｓThat Can Specifically Enhance mRNA Translation</title>
      <link>https://www.tsurumi.yokohama-cu.ac.jp/fg/publication/sineup_jove/</link>
      <pubDate>Fri, 08 Dec 2017 00:00:00 +0000</pubDate>
      <guid>https://www.tsurumi.yokohama-cu.ac.jp/fg/publication/sineup_jove/</guid>
      <description>&lt;p&gt;
&lt;a href=&#34;https://www.jove.com/video/58627/cell-based-assays-sineup-non-coding-rnas-that-can-specifically&#34; target=&#34;_blank&#34; rel=&#34;noopener&#34;&gt;J Vis Exp. 144 (2019) PMID: 30774120&lt;/a&gt;&lt;/p&gt;
&lt;h1 id=&#34;理研プレスリリース&#34;&gt;理研プレスリリース&lt;/h1&gt;
</description>
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    <item>
      <title>RUNX1 regulates site specificity of DNA demethylation by recruitment of DNA demethylation machineries in hematopoietic cells</title>
      <link>https://www.tsurumi.yokohama-cu.ac.jp/fg/publication/runx1_demethylation/</link>
      <pubDate>Wed, 06 Sep 2017 00:00:00 +0000</pubDate>
      <guid>https://www.tsurumi.yokohama-cu.ac.jp/fg/publication/runx1_demethylation/</guid>
      <description>&lt;p&gt;
&lt;a href=&#34;https://ashpublications.org/bloodadvances/article/1/20/1699/16277/RUNX1-regulates-site-specificity-of-DNA&#34; target=&#34;_blank&#34; rel=&#34;noopener&#34;&gt;blood advances 1, 20 (2017) PMID: 29296817&lt;/a&gt;&lt;/p&gt;
&lt;p&gt;理研プレスリリース&lt;/p&gt;
&lt;p&gt;
&lt;a href=&#34;https://www.riken.jp/press/2017/20170907_1/index.html&#34; target=&#34;_blank&#34; rel=&#34;noopener&#34;&gt;血液細胞の分化に必要な遺伝子をオンにするスイッチ&lt;/a&gt;&lt;/p&gt;
</description>
    </item>
    
    <item>
      <title>An atlas of human long non-coding RNAs with accurate 5&#39; ends</title>
      <link>https://www.tsurumi.yokohama-cu.ac.jp/fg/publication/fantomcat/</link>
      <pubDate>Wed, 01 Mar 2017 00:00:00 +0000</pubDate>
      <guid>https://www.tsurumi.yokohama-cu.ac.jp/fg/publication/fantomcat/</guid>
      <description>&lt;p&gt;
&lt;a href=&#34;https://www.nature.com/articles/nature21374&#34; target=&#34;_blank&#34; rel=&#34;noopener&#34;&gt;Nature 543, 199-204 (2017) PMID: 28241135&lt;/a&gt;&lt;/p&gt;
&lt;p&gt;理研プレスリリース&lt;/p&gt;
&lt;p&gt;
&lt;a href=&#34;https://www.riken.jp/press/2017/20170302_1/index.html&#34; target=&#34;_blank&#34; rel=&#34;noopener&#34;&gt;タンパク質をコードしないRNAをカタログ化&lt;/a&gt;&lt;/p&gt;
</description>
    </item>
    
    <item>
      <title>Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells</title>
      <link>https://www.tsurumi.yokohama-cu.ac.jp/fg/publication/fantom_enhancer/</link>
      <pubDate>Fri, 27 Feb 2015 00:00:00 +0000</pubDate>
      <guid>https://www.tsurumi.yokohama-cu.ac.jp/fg/publication/fantom_enhancer/</guid>
      <description>&lt;p&gt;
&lt;a href=&#34;https://science.sciencemag.org/content/347/6225/1010&#34; target=&#34;_blank&#34; rel=&#34;noopener&#34;&gt;Nature 543, 199-204 (2017) PMID: 28241135&lt;/a&gt;&lt;/p&gt;
&lt;h1 id=&#34;理研プレスリリース&#34;&gt;理研プレスリリース&lt;/h1&gt;
</description>
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    <item>
      <title>Discovery and functional analysis of lncRNAs: Methodologies to investigate an uncharacterized transcriptome</title>
      <link>https://www.tsurumi.yokohama-cu.ac.jp/fg/publication/lncrna_review/</link>
      <pubDate>Mon, 01 Jan 0001 00:00:00 +0000</pubDate>
      <guid>https://www.tsurumi.yokohama-cu.ac.jp/fg/publication/lncrna_review/</guid>
      <description>&lt;p&gt;
&lt;a href=&#34;https://www.sciencedirect.com/science/article/pii/S1874939915002163&#34; target=&#34;_blank&#34; rel=&#34;noopener&#34;&gt;Biochim Biophys Acta. 1859, 3-15 (2016) PMID: 26477492&lt;/a&gt;&lt;/p&gt;
&lt;h1 id=&#34;理研プレスリリース&#34;&gt;理研プレスリリース&lt;/h1&gt;
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