Kenji Mizutani Publications

Mizutani K, Machida Y, Unzai S, Park SY, Tame JR. Crystal structures of the catalytic domains of pseudouridine synthases RluC and RluD from Escherichia coli. Biochemistry. 2004 Apr 20;43(15):4454-63. PubMed PMID: 15078091.

Otto BR, Sijbrandi R, Luirink J, Oudega B, Heddle JG, Mizutani K, Park SY, Tame JR. Crystal structure of hemoglobin protease, a heme binding autotransporter protein from pathogenic Escherichia coli. J Biol Chem. 2005 Apr 29;280(17):17339-45. Epub 2005 Feb 22. PubMed PMID: 15728184.

Kim YK, Mizutani K, Rhee KH, Nam KH, Lee WH, Lee EH, Kim EE, Park SY, Hwang KY. Structural and mutational analysis of tRNA intron-splicing endonuclease from Thermoplasma acidophilum DSM 1728: catalytic mechanism of tRNA intron-splicing endonucleases. J Bacteriol. 2007 Nov;189(22):8339-46. Epub 2007 Sep 7. PubMed PMID: 17827289; PubMed Central PMCID: PMC2168659.

Yamamoto M, Unzai S, Saijo S, Ito K, Mizutani K, Suno-Ikeda C, Yabuki-Miyata Y, Terada T, Toyama M, Shirouzu M, Kobayashi T, Kakinuma Y, Yamato I, Yokoyama S, Iwata S, Murata T. Interaction and stoichiometry of the peripheral stalk subunits NtpE and NtpF and the N-terminal hydrophilic domain of NtpI of Enterococcus hirae V-ATPase. J Biol Chem. 2008 Jul 11;283(28):19422-31. doi: 10.1074/jbc.M801772200. Epub 2008 May 6. PubMed PMID: 18460472.

Mizutani K, Yamamoto M, Suzuki K, Yamato I, Kakinuma Y, Shirouzu M, Walker JE, Yokoyama S, Iwata S, Murata T. Structure of the rotor ring modified with N,N'-dicyclohexylcarbodiimide of the Na+-transporting vacuolar ATPase. Proc Natl Acad Sci U S A.b> 2011 Aug 16;108(33):13474-9. doi: 10.1073/pnas.1103287108. Epub 2011 Aug 3. PubMed PMID: 21813759; PubMed Central PMCID: PMC3158168.

Arai S, Saijo S, Suzuki K, Mizutani K, Kakinuma Y, Ishizuka-Katsura Y, Ohsawa N, Terada T, Shirouzu M, Yokoyama S, Iwata S, Yamato I, Murata T. Rotation mechanism of Enterococcus hirae V1-ATPase based on asymmetric crystal structures. Nature. 2013 Jan 31;493(7434):703-7. doi: 10.1038/nature11778. Epub 2013 Jan 13. PubMed PMID: 23334411.

Rahman S, Yamato I, Saijo S, Mizutani K, Ishizuka-Katsura Y, Ohsawa N, Terada T, Shirouzu M, Yokoyama S, Iwata S, Murata T. Biochemical and biophysical properties of interactions between subunits of the peripheral stalk region of human V-ATPase. PLoS One. 2013;8(2):e55704. doi: 10.1371/journal.pone.0055704. Epub 2013 Feb 11. PubMed PMID: 23409023; PubMed Central PMCID: PMC3569449.

Alam MJ, Arai S, Saijo S, Suzuki K, Mizutani K, Ishizuka-Katsura Y, Ohsawa N, Terada T, Shirouzu M, Yokoyama S, Iwata S, Kakinuma Y, Yamato I, Murata T. Loose binding of the DF axis with the A3B3 complex stimulates the initial activity of Enterococcus hirae V1-ATPase. PLoS One. 2013 Sep 13;8(9):e74291. doi:10.1371/journal.pone.0074291. eCollection 2013. PubMed PMID: 24058539; PubMed Central PMCID: PMC3772951.

Alam J, Yamato I, Arai S, Saijo S, Mizutani K, Ishizuka-Katsura Y, Ohsawa N, Terada T, Shirouzu M, Yokoyama S, Iwata S, Kakinuma Y, Murata T. Mutant LV(476-7)AA of A-subunit of Enterococcus hirae V1-ATPase: High affinity of A3B3 complex to DF axis and low ATPase activity. Springerplus. 2013 Dec 27;2:689. doi:10.1186/2193-1801-2-689. eCollection 2013. PubMed PMID: 24404436; PubMed Central PMCID: PMC3879392.

Rahman S, Yamato I, Saijo S, Mizutani K, Takamuku Y, Ishizuka-Katsura Y, Ohsawa N, Terada T, Shirouzu M, Yokoyama S, Murata T. Binding interactions of the peripheral stalk subunit isoforms from human V-ATPase. Biosci Biotechnol Biochem. 2016 May;80(5):878-90. doi: 10.1080/09168451.2015.1135043. Epub 2016 Feb 10. PubMed PMID: 26865189.

Tsukamoto T, Mizutani K, Hasegawa T, Takahashi M, Honda N, Hashimoto N, Shimono K, Yamashita K, Yamamoto M, Miyauchi S, Takagi S, Hayashi S, Murata T, Sudo Y. X-ray Crystallographic Structure of Thermophilic Rhodopsin: IMPLICATIONS FOR HIGH THERMAL STABILITY AND OPTOGENETIC FUNCTION. J Biol Chem. 2016 Jun 3;291(23):12223-32. doi: 10.1074/jbc.M116.719815. Epub 2016 Apr 18. PubMed PMID:27129243; PubMed Central PMCID: PMC4933271.

Suzuki K, Mizutani K, Maruyama S, Shimono K, Imai FL, Muneyuki E, Kakinuma Y, Ishizuka-Katsura Y, Shirouzu M, Yokoyama S, Yamato I, Murata T. Crystal structures of the ATP-binding and ADP-release dwells of the V1 rotary motor. Nat Commun. 2016 Oct 27;7:13235. doi: 10.1038/ncomms13235. PubMed PMID: 27807367; PubMed Central PMCID: PMC5095293.

Maruyama S, Suzuki K, Imamura M, Sasaki H, Matsunami H, Mizutani K, Saito Y, Imai FL, Ishizuka-Katsura Y, Kimura-Someya T, Shirouzu M, Uchihashi T, Ando T, Yamato I, Murata T. Metastable asymmetrical structure of a shaftless V1 motor. Sci Adv. 2019 Jan 30;5(1):eaau8149. doi: 10.1126/sciadv.aau8149. eCollection 2019 Jan. PubMed PMID: 30729160; PubMed Central PMCID: PMC6353620.